Selected work in generative modeling, systems biology, and data-driven drug discovery. Full bibliography below.
A generative deep learning approach to de novo antibiotic design
Cell , 2025 (Krishnan, A.; Anahtar, M. N; Valeri, J. A; ... Zhang, Y.; ...; Collins, J. J.)
Generative models + biological validation to accelerate discovery of new antibiotic classes.
Featured in BBC, MIT News, CNET, IEEE Spectrum.
Systems biology of angiogenesis signaling: Computational models and omics, WIREs Mechanisms of Disease , 2021 (Zhang, Y., et al.)
Featured in Advanced Science News
A systems biology model of Ang–Tie signaling, npj Systems Biology and Applications , 2021.
Model-based analysis of Src inhibition and Tie2 activation, iScience , 2019.
